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Intro to transcriptomics - from counts to functional analysis. Session 5: Data visualization with Qlucore Omics Explorer In-Person

Registration Required 

The Bioinformatics Support Hub has designed this teaching series for researchers interested in learning the basics steps for re-analysis of publicly available bulk-RNAseq data. We will introduce you to basic genomic data annotation concepts, including where to find data to re-analyze, how to perform differential gene analysis, how to add gene annotations, and how to visualize your results. Finally, we'll demonstrate different approaches to gene perform gene pathway analysis. Importantly, we have introduced interspersed coached-practice sessions to which attendees will be invited to participate. In these sessions, you will be able to try things for yourself and get immediate support if needed. (Please see below for overall schedule).  

  • Session 1 - Intro to annotation of gene expression data (Tue, August 2nd)
  • Session 2 - Where in the World is the Data You Need? How to Find and Reuse Data (e.g. GREIN) – (Thurs, August 4th)
  • Coached-practice 1 - Exercise sources and genomic information format (annotations and gene ID) of datasets (Tue, August 9th)

  • Session 3 - Re-analyze public dataset with DESeq2 package (Thurs, August 11th)
  • Session 4 - biomaRt using R package (Tue, August 16th)
  • Coached-practice 2 - Differential Gene expression, annotation (Thurs, August 18th)

  • Session 5 - Visualization with Qlucore (Tue, August 23rd)
  • Coached-practice 3 - Visualization with Qlucore (Thurs, August 25th)

  • Session 6 – Functional analysis of omics data: Overrepresentation Analysis ORA (Tue, August 30th)
  • Session 7 – Gene Set Enrichment Analysis GSEA (Thurs, September 1st)
  • Coached-practice 4 – Functional Pathway Analysis (Tue, August 6th)

Data Visualization with Qlucore Omics Explorer 

Attendance online - zoom 

Learn how to easy analyze and visualize your data using Qlucore Omics Explorer. Qlucore is a program aimed for biologists as well as bioinformaticians. This webinar is an introduction on how easy it can be to present data with plots such us PCA, heatmaps, box plots and many more to get the most out of our data. The Medical Library provides free access to Qlucore. Register for an account here

Date:
Tuesday, August 23, 2022
Time:
10:00am - 12:00pm
Time Zone:
Eastern Time - US & Canada (change)
Location:
Zoom Session -Medical (online only_1)
Campus:
Medical School
Categories:
  Bioinformatics  

Registration is required. There are no seats available but a waiting list is available.

Event Organizer

Profile photo of Rolando Garcia-Milian
Rolando Garcia-Milian