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NGS Data Analysis in Partek® Software: Onsite Workshop


Morning Session (Overview, Hands On: Analysis on RNA-Seq Data): 9:00AM – 12:00PM

Free access to Partek Flow is provided by the Yale Medical Library. Register for an account here:

This session will start with an overview of Partek Software solutions followed with a hands on RNA-Seq Data Analysis in Partek Flow. Topics will include how to use statistical tests to identify differentially expressed transcripts and alternative spliced genes among sample groups, how to generate a list of genes of interest and identify high level biological trends using Gene Ontology.

Register for a Partek Flow account:

  • Import data (fastq, bam, text format)
  •  Perform QA/AC (Pre-alignment QA/AC, Post-alignment QA/QC)
  • Trim bases
  • Alignment
  • Gene/transcript abundance estimate (E/M)
  •  Differential expression detection (GSA, ANOVA)
  • Filter gene list
  • GO Enrichment Analysis
  • Visualization

§  Quality score distribution

§  Base composition

§  PCA scatterplot

§  Dotplot

§  Volcano plot,

§  Hierarchical clustering

§  Chromosome view

Afternoon Session (Open Lab; Q&A): 1:30PM – 4:00PM

We hope to see you there!

Thursday, September 29, 2016
9:00am - 12:00pm
Time Zone:
Eastern Time - US & Canada (change)
C-103, SHM, 333 Cedar St, New Haven, 06510
Medical School
Registration has closed.

Event Organizer

Profile photo of Rolando Garcia-Milian
Rolando Garcia-Milian