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DTSTART:20250930T140000Z
DTEND:20250930T160000Z
DTSTAMP:20250930T000000Z
SUMMARY:Functional Analysis of Omics Data: Part 3 Protein Interaction Network Analysis and Visualization
DESCRIPTION:\n\n\n\nRegistration required | Attendance 
 in-person\n\nDescription: Cytoscape is widely used open-source tools for 
 the analysis and visualization of omics networked data e.g.\, proteomics\, 
 transcriptomics\, metabolomics. Its algorithms and complementary apps allow 
 for the exploration of complex interactions between experimentally 
 generated molecules\, and the subsequent prediction of functions and 
 pathways. This introductory session will provide an overview on how to use 
 Cytoscape and the STRING app to analyze and functionally annotate a 
 protein-protein interaction network generated from differentially expressed 
 genes or differentially abundant proteins. During thesession\, we will use 
 a tutorial dataset that will be made available to all the 
 registrants.\n\nThe goals of the session are:\n\n\n	Learning how to load 
 datasets and generate a protein interaction network using 
 STRING.\n	Understanding data visualization and learning how to navigate the 
 network.\n	Uploading molecule-associated data (e.g.\, fold changes\, 
 p-values) and visualizing it and other data annotations.\n	Learning how to 
 identify clusters and key nodes (hubs). \n	Learning how to do pathway 
 analysis of the resulting network and clusters. 
 \n\n\nRequisite:\n\nDownload and install Cytoscape \n\nAttendees to this 
 workshop may also be interested in attending the workshops: Part 1 
 Overrepresentation Analysis\, and Part 2 Gene Set Enrichment Analysis
LOCATION:SHM L 111\, Cushing/Whitney Medical Library\, 333 Cedar Street
ORGANIZER;CN="Rolando Garcia-Milian":MAILTO:rolando.milian@yale.edu
CATEGORIES:Bioinformatics
CONTACT;CN="Rolando Garcia-Milian":MAILTO:rolando.milian@yale.edu
STATUS:CONFIRMED
UID:LibCal-15239131
URL:https://schedule.yale.edu/event/15239131
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