Bioinformatics Workshop Series - Session 5 - *Online* DEMO - Data visualization with Qlucore Omics Explorer
Bioinformatics Workshop Series - Session 5 - *Online* DEMO - Data visualization with Qlucore Omics Explorer In-Person / Online
Registration Required
Workshop Series: Introduction to bulk RNA-seq analysis - from counts to functional analysis
Summary:
The Bioinformatics Support Hub has designed this hands-on teaching series for researchers interested in learning the basics steps for re-analysis of publicly available bulk-RNAseq data. Over the next two months, you can learn basic concepts concerning genomic data annotation and vocabulary, where to find bulk RNAseq data to re-analyze, how to perform differential gene analysis in RStudio and with point-click proprietary software, how to visualize your results, how to find transcription factors that may be regulating differentially expressed genes, and finally different approaches to perform gene pathway analysis. *Registrations for October sessions will open at the end of September.
Session 5. DEMO - Analyzing and visualizing RNAseq Public Dataset using Qlucore Omics Explorer.
In this *Online* session you will be able to learn how to easily analyze and visualize publicly avaialble RNAseq data using Qlucore Omics Explorer. Qlucore is a program aimed for biologists as well as bioinformaticians. This webinar is an introduction on how to use this "point and click" software to produce publication level plots such us PCA, heatmaps, box plots and many more. The Medical Library provides free access to Qlucore. Register for an account here
Details:
Recording – we will record the sessions so you can follow asynchronously.
Series Program:
|
Date |
Session |
Mode |
Presenter |
|
9/14/23 |
Session 1 - Intro to annotation of gene expression data |
In-person |
Rolando Milian |
|
9/21/23 |
Session 2 - Find, Download and Transform public bulk RNA seq data to analyze with DESeq2 in RStudio |
In-person |
Sofia Fertuzinhos |
|
9/28/23 |
Session 3 - Upload bulk RNAseq data tables into RStudio and setup a DESeq2 analysis |
In-person |
Sofia Fertuzinhos |
|
10/5/23 |
Session 4 - Manipulate DESeq2’s results() and plot functions |
In-person |
Sofia Fertuzinhos |
|
10/12/23 |
Session 5 – DEMO - Analyzing and Visualizing RNAseq public dataset using Qlucore Omics Explorer |
Online |
Yana Stackpole - Qlucore |
|
10/19/23 |
Session 6 – DEMO - Transcription factors analysis with TRANSFAC |
Online |
Volker – Transfac |
|
10/24/23 |
Session 7 - Functional analysis of omics data: Overrepresentation Analysis ORA |
In-person |
Rolando Milian |
|
10/26/23 |
Session 8 - Gene Set Enrichment Analysis GSEA |
In-person |
Rolando Milian |
- Date:
- Thursday, October 12, 2023
- Time:
- 10:00am - 12:00pm
- Time Zone:
- Eastern Time - US & Canada (change)
- Location:
- Zoom (Online Only)
- Campus:
- Medical School
- Categories:
- Bioinformatics
