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Bioinformatics Workshops: How to Find, Download and Process public RNA seq data to Analyze it with DESeq2 in RStudio *Online* In-Person

Sequencing data is increasingly available in public repositories making it easier for reanalysis.

Join us for this *online* session where we will explore the repository GEO RNA-seq Experiments Interactive Navigator (GREIN). We will focus on how to find bulk RNA seq datasets and which data tables should one download and process for differential gene expression analysis using the R package DESeq2.   

This workshop is designed for: biomedical researchers with none to minimal knowledge of command language or R programming. Limited to 25 seats.

You will learn how to:

  • Navigate GREIN - GEO RNA-seq Experiments Interactive Navigator
  • Download data tables
  • Modify raw counts table (.csv file) to be analyzed by DESeq2 in RStudio
  • Modify metadata table (.csv file) to be analyzed by DESeq2 in RStudio

Thursday, February 23, 2023 Show more dates
10:00am - 12:00pm
Time Zone:
Eastern Time - US & Canada (change)
SHM L 111, Cushing/Whitney Medical Library, 333 Cedar Street
Medical School

Registration is required. There are no seats available but a waiting list is available.

Event Organizer

Profile photo of Sofia Fertuzinhos
Sofia Fertuzinhos
Profile photo of Vermetha Polite
Vermetha Polite