Onsite training: From Promoter Analysis to Omics Data Analysis
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Onsite training: From Promoter Analysis to Omics Data Analysis In-Person
Part 1: Analyzing Gene Sets with TRANSFAC & PROTEOME
- Introduction to TRANSFAC and PROTEOME search interface, standard searches for transcription factors, for diseases, for pathways
- Functional analysis for pathways, GO terms, disease terms, with HumanPSD and TRANSPATH (PROTEOME)
- Analysis of single promoters for putative transcription factor binding sites with TRANSFAC
Part 2: Analyzing Genomic Intervals and Variants with TRANSFAC and geneXplain platform
- Analysis of BED format data (e.g. ChIP-seq) in TRANSFAC
- Variant Analysis (Identification of TFBSs affected by genomic variants) integrated in the geneXplain platform
Part 3: Upstream analysis as integrated promoter & pathway analysis Upstream analysis (integrated promoter–pathway analysis) using TRANSFAC and PROTEOME integrated in the geneXplain platform:
identification of transcription factors
identification of master regulators
- Introduction of the GenomeEnhancer software, automatically generated reports
- Date:
- Monday, December 10, 2018
- Time:
- 9:00am - 12:00pm
- Time Zone:
- Eastern Time - US & Canada (change)
- Location:
- C-103, SHM, 333 Cedar St, New Haven, 06510
- Campus:
- Medical School
- Categories:
- Bioinformatics
Registration has closed.
Event Organizer
Rolando Garcia-Milian
