NGS Data Analysis in Partek® Software: Onsite Workshop
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NGS Data Analysis in Partek® Software: Onsite Workshop In-Person
Agenda:
Morning Session (Overview, Hands On: Analysis on RNA-Seq Data): 9:00AM – 12:00PM
Free access to Partek Flow is provided by the Yale Medical Library. Register for an account here:
This session will start with an overview of Partek Software solutions followed with a hands on RNA-Seq Data Analysis in Partek Flow. Topics will include how to use statistical tests to identify differentially expressed transcripts and alternative spliced genes among sample groups, how to generate a list of genes of interest and identify high level biological trends using Gene Ontology.
Register for a Partek Flow account:
- Import data (fastq, bam, text format)
- Perform QA/AC (Pre-alignment QA/AC, Post-alignment QA/QC)
- Trim bases
- Alignment
- Gene/transcript abundance estimate (E/M)
- Differential expression detection (GSA, ANOVA)
- Filter gene list
- GO Enrichment Analysis
- Visualization
§ Quality score distribution
§ Base composition
§ PCA scatterplot
§ Dotplot
§ Volcano plot,
§ Hierarchical clustering
§ Chromosome view
Afternoon Session (Open Lab; Q&A): 1:30PM – 4:00PM
We hope to see you there!
- Date:
- Thursday, September 29, 2016
- Time:
- 9:00am - 12:00pm
- Time Zone:
- Eastern Time - US & Canada (change)
- Location:
- C-103, SHM, 333 Cedar St, New Haven, 06510
- Campus:
- Medical School
- Categories:
- Bioinformatics